API Reference

Auto-generated API reference documentation [1].

• medcat
  • medcat.datasets
    • medcat.datasets.data_collator
    • medcat.datasets.helpers
    • medcat.datasets.medcat_annotations
    • medcat.datasets.patient_concept_stream
    • medcat.datasets.transformers_ner
  • medcat.linking
    • medcat.linking.context_based_linker
    • medcat.linking.vector_context_model
  • medcat.ner
    • medcat.ner.transformers_ner
    • medcat.ner.vocab_based_annotator
    • medcat.ner.vocab_based_ner
  • medcat.pipeline
    • medcat.pipeline.pipe_runner
  • medcat.preprocessing
    • medcat.preprocessing.cleaners
    • medcat.preprocessing.iterators
    • medcat.preprocessing.taggers
    • medcat.preprocessing.tokenizers
  • medcat.stats
    • medcat.stats.stats
  • medcat.tokenizers
    • medcat.tokenizers.meta_cat_tokenizers
    • medcat.tokenizers.transformers_ner
  • medcat.utils
    • medcat.utils.meta_cat
      • medcat.utils.meta_cat.data_utils
      • medcat.utils.meta_cat.ml_utils
      • medcat.utils.meta_cat.models
    • medcat.utils.ner
      • medcat.utils.ner.deid
      • medcat.utils.ner.helpers
      • medcat.utils.ner.metrics
      • medcat.utils.ner.model
    • medcat.utils.regression
      • medcat.utils.regression.category_separation
      • medcat.utils.regression.category_separator
      • medcat.utils.regression.checking
      • medcat.utils.regression.converting
      • medcat.utils.regression.editing
      • medcat.utils.regression.mct_converter
      • medcat.utils.regression.regression_checker
      • medcat.utils.regression.results
      • medcat.utils.regression.suite_editor
      • medcat.utils.regression.targeting
      • medcat.utils.regression.utils
    • medcat.utils.relation_extraction
      • medcat.utils.relation_extraction.models
      • medcat.utils.relation_extraction.pad_seq
      • medcat.utils.relation_extraction.rel_dataset
      • medcat.utils.relation_extraction.tokenizer
      • medcat.utils.relation_extraction.utils
    • medcat.utils.saving
      • medcat.utils.saving.coding
      • medcat.utils.saving.converter
      • medcat.utils.saving.serializer
    • medcat.utils.cdb_utils
    • medcat.utils.checkpoint
    • medcat.utils.config_utils
    • medcat.utils.data_utils
    • medcat.utils.decorators
    • medcat.utils.filters
    • medcat.utils.hasher
    • medcat.utils.helpers
    • medcat.utils.make_vocab
    • medcat.utils.matutils
    • medcat.utils.medmentions
    • medcat.utils.memory_optimiser
    • medcat.utils.ml_utils
    • medcat.utils.model_creator
    • medcat.utils.normalizers
    • medcat.utils.other
    • medcat.utils.postprocessing
    • medcat.utils.preprocess_snomed
    • medcat.utils.preprocess_umls
    • medcat.utils.spacy_compatibility
    • medcat.utils.versioning
  • medcat.cat
  • medcat.cdb
  • medcat.cdb_maker
  • medcat.config
  • medcat.config_meta_cat
  • medcat.config_rel_cat
  • medcat.config_transformers_ner
  • medcat.meta_cat
  • medcat.pipe
  • medcat.rel_cat
  • medcat.vocab

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