medcat.utils.ner

Submodules

• medcat.utils.ner.deid
• medcat.utils.ner.helpers
• medcat.utils.ner.metrics
• medcat.utils.ner.model

Package Contents

Functions

metrics
deid_text(*args, **kwargs)
make_or_update_cdb(json_path[, cdb, min_count])	Creates a new CDB or updates an existing one with new

medcat.utils.ner.metrics(p, return_df=False, plus_recall=0, tokenizer=None, dataset=None, merged_negative={0, 1, -100}, padding_label=-100, csize=15, subword_label=1, verbose=False)

TODO: This could be done better, for sure. But it works.

medcat.utils.ner.deid_text(*args, **kwargs)

Return type:

str

medcat.utils.ner.make_or_update_cdb(json_path, cdb=None, min_count=0)

Creates a new CDB or updates an existing one with new concepts if the cdb argument is provided. All concepts that are less frequent than min_count will be ignored.

Parameters:

• json_path (str) – The json path

• cdb (Optional[CDB]) – The CDB if present. Defaults to None.

• min_count (int) – Minimum count to include. Defaults to 0.

Returns:

CDB – The same or new CDB.

Return type:

medcat.cdb.CDB