medcat.stats.mctexport

Module Contents

Classes

MedCATTrainerExportAnnotation	dict() -> new empty dictionary
MedCATTrainerExportDocument	dict() -> new empty dictionary
MedCATTrainerExportProject	dict() -> new empty dictionary
MedCATTrainerExport	dict() -> new empty dictionary

Functions

iter_projects(export)
iter_docs(export)
iter_anns(export)
count_all_annotations(export)
count_all_docs(export)
get_nr_of_annotations(doc)

Attributes

MedCATTrainerExportProjectInfo

The project name, project ID, CUIs str, and TUIs str

class medcat.stats.mctexport.MedCATTrainerExportAnnotation

Bases: typing_extensions.TypedDict

dict() -> new empty dictionary dict(mapping) -> new dictionary initialized from a mapping object’s

(key, value) pairs

dict(iterable) -> new dictionary initialized as if via:

d = {} for k, v in iterable:

d[k] = v

dict(**kwargs) -> new dictionary initialized with the name=value pairs

in the keyword argument list. For example: dict(one=1, two=2)

start: int

end: int

cui: str

value: str

class medcat.stats.mctexport.MedCATTrainerExportDocument

Bases: typing_extensions.TypedDict

dict() -> new empty dictionary dict(mapping) -> new dictionary initialized from a mapping object’s

(key, value) pairs

dict(iterable) -> new dictionary initialized as if via:

d = {} for k, v in iterable:

d[k] = v

dict(**kwargs) -> new dictionary initialized with the name=value pairs

in the keyword argument list. For example: dict(one=1, two=2)

name: str

id: Any

last_modified: str

text: str

annotations: List[MedCATTrainerExportAnnotation]

class medcat.stats.mctexport.MedCATTrainerExportProject

Bases: typing_extensions.TypedDict

dict() -> new empty dictionary dict(mapping) -> new dictionary initialized from a mapping object’s

(key, value) pairs

dict(iterable) -> new dictionary initialized as if via:

d = {} for k, v in iterable:

d[k] = v

dict(**kwargs) -> new dictionary initialized with the name=value pairs

in the keyword argument list. For example: dict(one=1, two=2)

name: str

id: Any

cuis: str

tuis: str | None

documents: List[MedCATTrainerExportDocument]

medcat.stats.mctexport.MedCATTrainerExportProjectInfo

The project name, project ID, CUIs str, and TUIs str

class medcat.stats.mctexport.MedCATTrainerExport

Bases: typing_extensions.TypedDict

dict() -> new empty dictionary dict(mapping) -> new dictionary initialized from a mapping object’s

(key, value) pairs

dict(iterable) -> new dictionary initialized as if via:

d = {} for k, v in iterable:

d[k] = v

dict(**kwargs) -> new dictionary initialized with the name=value pairs

in the keyword argument list. For example: dict(one=1, two=2)

projects: List[MedCATTrainerExportProject]

medcat.stats.mctexport.iter_projects(export)

Parameters:

export (MedCATTrainerExport) –

Return type:

Iterator[MedCATTrainerExportProject]

medcat.stats.mctexport.iter_docs(export)

Parameters:

export (MedCATTrainerExport) –

Return type:

Iterator[Tuple[MedCATTrainerExportProjectInfo, MedCATTrainerExportDocument]]

medcat.stats.mctexport.iter_anns(export)

Parameters:

export (MedCATTrainerExport) –

Return type:

Iterator[Tuple[MedCATTrainerExportProjectInfo, MedCATTrainerExportDocument, MedCATTrainerExportAnnotation]]

medcat.stats.mctexport.count_all_annotations(export)

Parameters:

export (MedCATTrainerExport) –

Return type:

int

medcat.stats.mctexport.count_all_docs(export)

Parameters:

export (MedCATTrainerExport) –

Return type:

int

medcat.stats.mctexport.get_nr_of_annotations(doc)

Parameters:

doc (MedCATTrainerExportDocument) –

Return type:

int